Background: In an earlier blog post, we described a system called Anna, which used a shared-nothing, thread-per-core architecture to achieve lightning-fast speeds by avoiding all coordination mechanisms. Anna also used lattice composition to enable a rich variety of coordination-free consistency levels. The first version of Anna blew existing in-memory KVSes out of the water: Anna is up to 700x faster than Masstree, an earlier state-of-the-art research KVS, and up to 800x faster than Intel’s “lock-free” TBB hash table. You can find the previous blog post here and the full paper here. We refer to that version of Anna as “Anna v0.” In this post, we describe how we extended the fastest KVS in the cloud to be extremely cost-efficient and …
Exploratory data analysis of genomic datasets using ADAM and Mango with Apache Spark on Amazon EMR (AWS Big Data Blog Repost)
Note: This blogpost is replicated from the AWS Big Data Blog and can be found here. As the cost of genomic sequencing has rapidly decreased, the amount of publicly available genomic data has soared over the past couple of years. New cohorts and studies have produced massive datasets consisting of over 100,000 individuals. Simultaneously, these datasets have been processed to extract genetic variation across populations, producing mass amounts of variation data for each cohort. In this era of big data, tools like Apache Spark have provided a user-friendly platform for batch processing of large datasets. However, to use such tools as a sufficient replacement to current bioinformatics pipelines, we need more accessible and comprehensive APIs for processing genomic data. We …
Implementing A Parameter Server in 15 Lines of Python with Ray
This blog post was originally posted here. View the code on Gist.
Distributed Policy Optimizers for Scalable and Reproducible Deep RL
In this blog post we introduce Ray RLlib, an RL execution toolkit built on the Ray distributed execution framework. RLlib implements a collection of distributed policy optimizers that make it easy to use a variety of training strategies with existing reinforcement learning algorithms written in frameworks such as PyTorch, TensorFlow, and Theano. This enables complex architectures for RL training (e.g., Ape-X, IMPALA), to be implemented once and reused many times across different RL algorithms and libraries. We discuss in more detail the design and performance of policy optimizers in the RLlib paper. What’s next for RLlib In the near term we plan to continue building out RLlib’s set of policy optimizers and algorithms. Our aim is for RLlib to serve …
Anna: A Crazy Fast, Super-Scalable, Flexibly Consistent KVS 🗺
This article cross-posted from the DataBeta blog. There’s fast and there’s fast. This post is about Anna, a key/value database design from our team at Berkeley that’s got phenomenal speed and buttery smooth scaling, with an unprecedented range of consistency guarantees. Details are in our upcoming ICDE18 paper on Anna. Conventional wisdom (or at least Jeff Dean wisdom) says that you have to redesign your system every time you scale by 10x. As researchers, we asked the counter-cultural question: what would it take to build a key-value store that would excel across many orders of magnitude of scale, from a single multicore box to the global cloud? Turns out this kind of curiosity can lead to a system with pretty interesting practical …