Console Output

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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-graphx_2.12/3.0.1/spark-graphx_2.12-3.0.1.jar (431 kB at 3.1 MB/s)
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-mllib_2.12/3.0.1/spark-mllib_2.12-3.0.1.jar (5.9 MB at 18 MB/s)
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-minhash-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-minhash-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-minhash-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-minhash-spark3_2.12 ---
[INFO] Modified 0 of 8 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-minhash-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-minhash-spark3_2.12 ---
[INFO] /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/src/main/scala:-1: info: compiling
[INFO] Compiling 6 source files to /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/target/2.12.8/classes at 1611856350130
[INFO] prepare-compile in 0 s
[INFO] compile in 5 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-minhash-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-minhash-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-minhash-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-minhash-spark3_2.12 ---
[INFO] /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/src/test/scala:-1: info: compiling
[INFO] Compiling 2 source files to /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/target/2.12.8/test-classes at 1611856356000
[INFO] prepare-compile in 0 s
[INFO] compile in 5 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-minhash-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-minhash-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-minhash-spark3_2.12 ---
Discovery starting.
Discovery completed in 279 milliseconds.
Run starting. Expected test count is: 5
MinHashSuite:
2021-01-28 09:52:42 WARN  Utils:69 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0)
2021-01-28 09:52:42 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2021-01-28 09:52:43 WARN  NativeCodeLoader:60 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- compute exact overlap for ten 1000 bp reads
- compute approximate overlap for ten 1000 bp reads across different band sizes
- should throw exception if we pick an illegal band count
MinHashSignatureSuite:
- compute the similarity of signatures
- compute buckets for a simple signature
Run completed in 5 seconds, 345 milliseconds.
Total number of tests run: 5
Suites: completed 3, aborted 0
Tests: succeeded 5, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] -------------< org.bdgenomics.utils:utils-io-spark3_2.12 >--------------
[INFO] Building utils-io-spark3_2.12: I/O utils 0.4.0-SNAPSHOT            [4/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-io-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-io-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-io-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-io-spark3_2.12 ---
[INFO] Modified 0 of 9 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-io-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-io-spark3_2.12 ---
[INFO] /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/src/main/scala:-1: info: compiling
[INFO] Compiling 8 source files to /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/target/2.12.8/classes at 1611856368590
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-io-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-io-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-io-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-io-spark3_2.12 ---
[INFO] /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/src/test/scala:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/target/2.12.8/test-classes at 1611856373551
[INFO] prepare-compile in 0 s
[INFO] compile in 3 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-io-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-io-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-io-spark3_2.12 ---
Discovery starting.
Discovery completed in 119 milliseconds.
Run starting. Expected test count is: 7
LocalFileLocatorSuite:
- parentLocator retrieves the parent directory
- relativeLocator retrieves a subdirectory
- bytes accesses the named underlying file
FileLocatorSuite:
- parseSlash can correctly parse a one-slash string
- parseSlash can correctly parse a two-slash string
- parseSlash can correctly parse a no-slash string
ByteArrayLocatorSuite:
- byte access can be wrapped in a locator correctly
Run completed in 275 milliseconds.
Total number of tests run: 7
Suites: completed 4, aborted 0
Tests: succeeded 7, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] ---------< org.bdgenomics.utils:utils-statistics-spark3_2.12 >----------
[INFO] Building utils-statistics-spark3_2.12: Spark code for fitting statistical models 0.4.0-SNAPSHOT [5/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-statistics-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-statistics-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-statistics-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-statistics-spark3_2.12 ---
[INFO] Modified 0 of 6 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-statistics-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-statistics-spark3_2.12 ---
[INFO] /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/target/2.12.8/classes at 1611856379622
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-statistics-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-statistics-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-statistics-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-statistics-spark3_2.12 ---
[INFO] /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/src/test/scala:-1: info: compiling
[INFO] Compiling 2 source files to /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/target/2.12.8/test-classes at 1611856385222
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-statistics-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-statistics-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-statistics-spark3_2.12 ---
Discovery starting.
Discovery completed in 145 milliseconds.
Run starting. Expected test count is: 6
ZScoreNormalizationSuite:
2021-01-28 09:53:11 WARN  Utils:69 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0)
2021-01-28 09:53:11 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2021-01-28 09:53:11 WARN  NativeCodeLoader:60 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- compute mean of a set of samples
- compute variance of a set of samples
- variance should be 0 if all elements are the same
- check z-score for a varying rdd
PoissonMixtureModelSuite:
- run the m step on a trivial example
2021-01-28 09:53:17 WARN  BLAS:61 - Failed to load implementation from: com.github.fommil.netlib.NativeSystemBLAS
2021-01-28 09:53:17 WARN  BLAS:61 - Failed to load implementation from: com.github.fommil.netlib.NativeRefBLAS
- fit a poisson to several thousand points
Run completed in 7 seconds, 12 milliseconds.
Total number of tests run: 6
Suites: completed 3, aborted 0
Tests: succeeded 6, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] -------------< org.bdgenomics.utils:utils-cli-spark3_2.12 >-------------
[INFO] Building utils-cli-spark3_2.12: utilities for building command line applications 0.4.0-SNAPSHOT [6/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-cli-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-cli-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-cli-spark3_2.12 ---
[INFO] Modified 0 of 3 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-cli-spark3_2.12 ---
[INFO] /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/src/main/scala:-1: info: compiling
[INFO] Compiling 3 source files to /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/target/2.12.8/classes at 1611856398997
[WARNING] warning: there was one deprecation warning
[WARNING] warning: there was one deprecation warning (since 2.12.0)
[WARNING] warning: there were two deprecation warnings in total; re-run with -deprecation for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 3 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-cli-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-cli-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-cli-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-cli-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --------< org.bdgenomics.utils:utils-serialization-spark3_2.12 >--------
[INFO] Building utils-serialization-spark3_2.12: tools for serializing data 0.4.0-SNAPSHOT [7/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-serialization-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-serialization-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-serialization-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-serialization-spark3_2.12 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-serialization-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-serialization-spark3_2.12 ---
[INFO] /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/src/main/scala:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/target/2.12.8/classes at 1611856403918
[INFO] prepare-compile in 0 s
[INFO] compile in 2 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-serialization-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-serialization-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-serialization-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-serialization-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-serialization-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-serialization-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-serialization-spark3_2.12 ---
Discovery starting.
Discovery completed in 107 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 164 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] ---------< org.bdgenomics.utils:utils-intervalrdd-spark3_2.12 >---------
[INFO] Building utils-intervalrdd-spark3_2.12: IntervalRDD based on interval tree 0.4.0-SNAPSHOT [8/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-intervalrdd-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-intervalrdd-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Modified 0 of 8 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-intervalrdd-spark3_2.12 ---
[INFO] /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/src/main/scala:-1: info: compiling
[INFO] Compiling 5 source files to /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/target/2.12.8/classes at 1611856408907
[INFO] prepare-compile in 0 s
[INFO] compile in 5 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-intervalrdd-spark3_2.12 ---
[INFO] /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/src/test/scala:-1: info: compiling
[INFO] Compiling 3 source files to /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/target/2.12.8/test-classes at 1611856415052
[INFO] prepare-compile in 0 s
[INFO] compile in 6 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-intervalrdd-spark3_2.12 ---
Discovery starting.
Discovery completed in 178 milliseconds.
Run starting. Expected test count is: 31
IntervalRDDSuite:
2021-01-28 09:53:42 WARN  Utils:69 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0)
2021-01-28 09:53:42 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2021-01-28 09:53:43 WARN  NativeCodeLoader:60 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- create IntervalRDD from RDD of datatype string
- merge new values into existing IntervalRDD
- call put multiple times on data with same interval
- test filterByInterval
- verify no data is lost in conversion from rdd to intervalrdd
- count data where chromosome partitions overlap
- get data where chromosome partitions overlap
- apply predicate to the RDD
- testing collect
- test before and after toRDD sizes are the same
- testing mapValues
- Attempt to access data from non existing key
- Delete values from rdd
- Repartitions IntervalRDD
IntervalPartitionSuite:
- create new partition
- create partition from iterator
- get values from iterator-created partition
- correctly fetches data that is initially unsorted
- put some for iterator of intervals and key-values
- get some for iterator of intervals
- selectively getting intervals
- putting differing number of reads into different regions
- putting then getting a region that overlaps 3 regions
- applying a predicate
- applying a map
IntervalArraySuite:
- succeeds in searching empty IntervalArray
- build a IntervalArray with a single item and retrieve data
- build a IntervalArray out of multiple datapoints and retrieve data
- verify get with requireOverlap set to false on IntervalArray retrieves nearest data
- verify IntervalArray fetches all valid ranges
- inserts new elements into IntervalArray
Run completed in 6 seconds, 832 milliseconds.
Total number of tests run: 31
Suites: completed 4, aborted 0
Tests: succeeded 31, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for utils 0.4.0-SNAPSHOT:
[INFO] 
[INFO] utils .............................................. SUCCESS [  2.140 s]
[INFO] utils-misc-spark3_2.12: Miscellaneous Spark utility code SUCCESS [ 17.266 s]
[INFO] utils-minhash-spark3_2.12: MinHash-based Jaccard similarity estimator SUCCESS [ 19.844 s]
[INFO] utils-io-spark3_2.12: I/O utils .................... SUCCESS [ 10.932 s]
[INFO] utils-statistics-spark3_2.12: Spark code for fitting statistical models SUCCESS [ 19.333 s]
[INFO] utils-cli-spark3_2.12: utilities for building command line applications SUCCESS [  5.193 s]
[INFO] utils-serialization-spark3_2.12: tools for serializing data SUCCESS [  4.836 s]
[INFO] utils-intervalrdd-spark3_2.12: IntervalRDD based on interval tree SUCCESS [ 21.043 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  01:40 min
[INFO] Finished at: 2021-01-28T09:53:49-08:00
[INFO] ------------------------------------------------------------------------

# make verbose again
set -x -v
+ set -x -v

# we are done with maven, so clean up the maven temp dir
find ${UTILS_MVN_TMP_DIR}
+ find /tmp/utilsTestMvnbwXXiHd
/tmp/utilsTestMvnbwXXiHd
/tmp/utilsTestMvnbwXXiHd/LocalFileLocatorSuite3522175191951626103test
/tmp/utilsTestMvnbwXXiHd/LocalFileLocatorSuite1369509184891603930test
/tmp/utilsTestMvnbwXXiHd/LocalFileLocatorSuite2188624272063784767test
/tmp/utilsTestMvnbwXXiHd/test.txt5711089614330154914.txt
rm -rf ${UTILS_MVN_TMP_DIR}
+ rm -rf /tmp/utilsTestMvnbwXXiHd

echo
+ echo

echo "All the tests passed"
+ echo 'All the tests passed'
All the tests passed
echo
+ echo

+ '[' 2.7.5 == 2.7.5 ']'
+ mvn --settings=/home/jenkins/workspace/settings.xml deploy -DskipTests -Pdistribution
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] utils                                                              [pom]
[INFO] utils-misc-spark3_2.12: Miscellaneous Spark utility code           [jar]
[INFO] utils-minhash-spark3_2.12: MinHash-based Jaccard similarity estimator [jar]
[INFO] utils-io-spark3_2.12: I/O utils                                    [jar]
[INFO] utils-statistics-spark3_2.12: Spark code for fitting statistical models [jar]
[INFO] utils-cli-spark3_2.12: utilities for building command line applications [jar]
[INFO] utils-serialization-spark3_2.12: tools for serializing data        [jar]
[INFO] utils-intervalrdd-spark3_2.12: IntervalRDD based on interval tree  [jar]
[INFO] 
[INFO] -----------< org.bdgenomics.utils:utils-parent-spark3_2.12 >------------
[INFO] Building utils 0.4.0-SNAPSHOT                                      [1/8]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-parent-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-parent-spark3_2.12 ---
[INFO] Modified 0 of 40 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ utils-parent-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-parent-spark3_2.12 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ utils-parent-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ utils-parent-spark3_2.12 ---
[INFO] No source files found
[INFO] 
[INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ utils-parent-spark3_2.12 ---
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-parent-spark3_2.12/0.4.0-SNAPSHOT/utils-parent-spark3_2.12-0.4.0-SNAPSHOT.pom
[INFO] 
[INFO] --- maven-deploy-plugin:3.0.0-M1:deploy (default-deploy) @ utils-parent-spark3_2.12 ---
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-parent-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml
Progress (1): 625 B
                   
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-parent-spark3_2.12/0.4.0-SNAPSHOT/utils-parent-spark3_2.12-0.4.0-20210128.175353-106.pom
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Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-parent-spark3_2.12/maven-metadata.xml
Progress (1): 364 B
                   
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-parent-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml
Progress (1): 625 B
                   
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Progress (1): 364 B
                   
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[INFO] 
[INFO] ------------< org.bdgenomics.utils:utils-misc-spark3_2.12 >-------------
[INFO] Building utils-misc-spark3_2.12: Miscellaneous Spark utility code 0.4.0-SNAPSHOT [2/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-misc-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-misc-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-misc-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-misc/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-misc-spark3_2.12 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-misc-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-misc-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-misc-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-misc-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-misc/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-misc-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-misc-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-misc-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-misc-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-misc-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ utils-misc-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-misc/target/utils-misc-spark3_2.12-0.4.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ utils-misc-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-misc/target/utils-misc-spark3_2.12-0.4.0-SNAPSHOT-tests.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ utils-misc-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-misc-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-misc-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-misc-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-misc/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ utils-misc-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ utils-misc-spark3_2.12 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-misc/target/utils-misc-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ utils-misc-spark3_2.12 ---
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-misc/target/utils-misc-spark3_2.12-0.4.0-SNAPSHOT.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/utils-misc-spark3_2.12-0.4.0-SNAPSHOT.jar
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-misc/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/utils-misc-spark3_2.12-0.4.0-SNAPSHOT.pom
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-misc/target/utils-misc-spark3_2.12-0.4.0-SNAPSHOT-tests.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/utils-misc-spark3_2.12-0.4.0-SNAPSHOT-tests.jar
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-misc/target/utils-misc-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/utils-misc-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-deploy-plugin:3.0.0-M1:deploy (default-deploy) @ utils-misc-spark3_2.12 ---
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml
Progress (1): 1.2 kB
                    
Downloaded from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml (1.2 kB at 7.9 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/utils-misc-spark3_2.12-0.4.0-20210128.175404-106.jar
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/utils-misc-spark3_2.12-0.4.0-20210128.175404-106.jar (6.9 kB at 12 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/utils-misc-spark3_2.12-0.4.0-20210128.175404-106.pom
Progress (1): 3.9 kB
                    
Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/utils-misc-spark3_2.12-0.4.0-20210128.175404-106.pom (3.9 kB at 7.5 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/utils-misc-spark3_2.12-0.4.0-20210128.175404-106-tests.jar
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/utils-misc-spark3_2.12-0.4.0-20210128.175404-106-tests.jar (29 kB at 49 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/utils-misc-spark3_2.12-0.4.0-20210128.175404-106-javadoc.jar
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/utils-misc-spark3_2.12-0.4.0-20210128.175404-106-javadoc.jar (1.1 MB at 1.4 MB/s)
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/maven-metadata.xml
Progress (1): 362 B
                   
Downloaded from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/maven-metadata.xml (362 B at 1.9 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml
Progress (1): 1.2 kB
                    
Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml (1.2 kB at 2.3 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/maven-metadata.xml
Progress (1): 362 B
                   
Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-misc-spark3_2.12/maven-metadata.xml (362 B at 689 B/s)
[INFO] 
[INFO] -----------< org.bdgenomics.utils:utils-minhash-spark3_2.12 >-----------
[INFO] Building utils-minhash-spark3_2.12: MinHash-based Jaccard similarity estimator 0.4.0-SNAPSHOT [3/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-minhash-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-minhash-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-minhash-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-minhash-spark3_2.12 ---
[INFO] Modified 0 of 8 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-minhash-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-minhash-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-minhash-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-minhash-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-minhash-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-minhash-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-minhash-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-minhash-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-minhash-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ utils-minhash-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/target/utils-minhash-spark3_2.12-0.4.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ utils-minhash-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/target/utils-minhash-spark3_2.12-0.4.0-SNAPSHOT-tests.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ utils-minhash-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-minhash-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-minhash-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-minhash-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ utils-minhash-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ utils-minhash-spark3_2.12 ---
model contains 10 documentable templates
/home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/src/main/scala/org/bdgenomics/utils/minhash/MinHash.scala:72: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
one warning found
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/target/utils-minhash-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ utils-minhash-spark3_2.12 ---
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/target/utils-minhash-spark3_2.12-0.4.0-SNAPSHOT.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-minhash-spark3_2.12/0.4.0-SNAPSHOT/utils-minhash-spark3_2.12-0.4.0-SNAPSHOT.jar
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-minhash-spark3_2.12/0.4.0-SNAPSHOT/utils-minhash-spark3_2.12-0.4.0-SNAPSHOT.pom
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/target/utils-minhash-spark3_2.12-0.4.0-SNAPSHOT-tests.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-minhash-spark3_2.12/0.4.0-SNAPSHOT/utils-minhash-spark3_2.12-0.4.0-SNAPSHOT-tests.jar
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-minhash/target/utils-minhash-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-minhash-spark3_2.12/0.4.0-SNAPSHOT/utils-minhash-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-deploy-plugin:3.0.0-M1:deploy (default-deploy) @ utils-minhash-spark3_2.12 ---
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-minhash-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-minhash-spark3_2.12/0.4.0-SNAPSHOT/utils-minhash-spark3_2.12-0.4.0-20210128.175416-106-tests.jar
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Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-minhash-spark3_2.12/maven-metadata.xml
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-minhash-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-minhash-spark3_2.12/maven-metadata.xml
Progress (1): 365 B
                   
Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-minhash-spark3_2.12/maven-metadata.xml (365 B at 686 B/s)
[INFO] 
[INFO] -------------< org.bdgenomics.utils:utils-io-spark3_2.12 >--------------
[INFO] Building utils-io-spark3_2.12: I/O utils 0.4.0-SNAPSHOT            [4/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-io-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-io-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-io-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-io-spark3_2.12 ---
[INFO] Modified 0 of 9 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-io-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-io-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-io-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-io-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-io-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-io-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-io-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-io-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-io-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ utils-io-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/target/utils-io-spark3_2.12-0.4.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ utils-io-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/target/utils-io-spark3_2.12-0.4.0-SNAPSHOT-tests.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ utils-io-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-io-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-io-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-io-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ utils-io-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ utils-io-spark3_2.12 ---
model contains 14 documentable templates
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/target/utils-io-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ utils-io-spark3_2.12 ---
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/target/utils-io-spark3_2.12-0.4.0-SNAPSHOT.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-io-spark3_2.12/0.4.0-SNAPSHOT/utils-io-spark3_2.12-0.4.0-SNAPSHOT.jar
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-io-spark3_2.12/0.4.0-SNAPSHOT/utils-io-spark3_2.12-0.4.0-SNAPSHOT.pom
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/target/utils-io-spark3_2.12-0.4.0-SNAPSHOT-tests.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-io-spark3_2.12/0.4.0-SNAPSHOT/utils-io-spark3_2.12-0.4.0-SNAPSHOT-tests.jar
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-io/target/utils-io-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-io-spark3_2.12/0.4.0-SNAPSHOT/utils-io-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-deploy-plugin:3.0.0-M1:deploy (default-deploy) @ utils-io-spark3_2.12 ---
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-io-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-io-spark3_2.12/0.4.0-SNAPSHOT/utils-io-spark3_2.12-0.4.0-20210128.175427-106.jar
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-io-spark3_2.12/0.4.0-SNAPSHOT/utils-io-spark3_2.12-0.4.0-20210128.175427-106.pom
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-io-spark3_2.12/0.4.0-SNAPSHOT/utils-io-spark3_2.12-0.4.0-20210128.175427-106-tests.jar
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-io-spark3_2.12/0.4.0-SNAPSHOT/utils-io-spark3_2.12-0.4.0-20210128.175427-106-javadoc.jar
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-io-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-io-spark3_2.12/maven-metadata.xml (360 B at 727 B/s)
[INFO] 
[INFO] ---------< org.bdgenomics.utils:utils-statistics-spark3_2.12 >----------
[INFO] Building utils-statistics-spark3_2.12: Spark code for fitting statistical models 0.4.0-SNAPSHOT [5/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-statistics-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-statistics-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-statistics-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-statistics-spark3_2.12 ---
[INFO] Modified 0 of 6 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-statistics-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-statistics-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-statistics-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-statistics-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-statistics-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-statistics-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-statistics-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-statistics-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-statistics-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ utils-statistics-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/target/utils-statistics-spark3_2.12-0.4.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ utils-statistics-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/target/utils-statistics-spark3_2.12-0.4.0-SNAPSHOT-tests.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ utils-statistics-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-statistics-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-statistics-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-statistics-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ utils-statistics-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ utils-statistics-spark3_2.12 ---
model contains 11 documentable templates
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/target/utils-statistics-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ utils-statistics-spark3_2.12 ---
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/target/utils-statistics-spark3_2.12-0.4.0-SNAPSHOT.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-statistics-spark3_2.12/0.4.0-SNAPSHOT/utils-statistics-spark3_2.12-0.4.0-SNAPSHOT.jar
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-statistics-spark3_2.12/0.4.0-SNAPSHOT/utils-statistics-spark3_2.12-0.4.0-SNAPSHOT.pom
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/target/utils-statistics-spark3_2.12-0.4.0-SNAPSHOT-tests.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-statistics-spark3_2.12/0.4.0-SNAPSHOT/utils-statistics-spark3_2.12-0.4.0-SNAPSHOT-tests.jar
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-statistics/target/utils-statistics-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-statistics-spark3_2.12/0.4.0-SNAPSHOT/utils-statistics-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-deploy-plugin:3.0.0-M1:deploy (default-deploy) @ utils-statistics-spark3_2.12 ---
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-statistics-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-statistics-spark3_2.12/0.4.0-SNAPSHOT/utils-statistics-spark3_2.12-0.4.0-20210128.175438-106.pom
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-statistics-spark3_2.12/0.4.0-SNAPSHOT/utils-statistics-spark3_2.12-0.4.0-20210128.175438-106-tests.jar
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-statistics-spark3_2.12/maven-metadata.xml (368 B at 693 B/s)
[INFO] 
[INFO] -------------< org.bdgenomics.utils:utils-cli-spark3_2.12 >-------------
[INFO] Building utils-cli-spark3_2.12: utilities for building command line applications 0.4.0-SNAPSHOT [6/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-cli-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-cli-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-cli-spark3_2.12 ---
[INFO] Modified 0 of 3 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-cli-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-cli-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-cli-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-cli-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ utils-cli-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/target/utils-cli-spark3_2.12-0.4.0-SNAPSHOT.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ utils-cli-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-cli-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-cli-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ utils-cli-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ utils-cli-spark3_2.12 ---
model contains 17 documentable templates
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/target/utils-cli-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ utils-cli-spark3_2.12 ---
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/target/utils-cli-spark3_2.12-0.4.0-SNAPSHOT.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-cli-spark3_2.12/0.4.0-SNAPSHOT/utils-cli-spark3_2.12-0.4.0-SNAPSHOT.jar
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-cli-spark3_2.12/0.4.0-SNAPSHOT/utils-cli-spark3_2.12-0.4.0-SNAPSHOT.pom
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-cli/target/utils-cli-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-cli-spark3_2.12/0.4.0-SNAPSHOT/utils-cli-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-deploy-plugin:3.0.0-M1:deploy (default-deploy) @ utils-cli-spark3_2.12 ---
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-cli-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml
Progress (1): 1.0 kB
                    
Downloaded from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-cli-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml (1.0 kB at 5.8 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-cli-spark3_2.12/0.4.0-SNAPSHOT/utils-cli-spark3_2.12-0.4.0-20210128.175450-106.jar
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-cli-spark3_2.12/0.4.0-SNAPSHOT/utils-cli-spark3_2.12-0.4.0-20210128.175450-106.pom
Progress (1): 2.8 kB
                    
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-cli-spark3_2.12/0.4.0-SNAPSHOT/utils-cli-spark3_2.12-0.4.0-20210128.175450-106-javadoc.jar
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-cli-spark3_2.12/0.4.0-SNAPSHOT/utils-cli-spark3_2.12-0.4.0-20210128.175450-106-javadoc.jar (1.2 MB at 1.4 MB/s)
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-cli-spark3_2.12/maven-metadata.xml
Progress (1): 361 B
                   
Downloaded from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-cli-spark3_2.12/maven-metadata.xml (361 B at 2.1 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-cli-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml
Progress (1): 1.0 kB
                    
Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-cli-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml (1.0 kB at 1.9 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-cli-spark3_2.12/maven-metadata.xml
Progress (1): 361 B
                   
Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-cli-spark3_2.12/maven-metadata.xml (361 B at 683 B/s)
[INFO] 
[INFO] --------< org.bdgenomics.utils:utils-serialization-spark3_2.12 >--------
[INFO] Building utils-serialization-spark3_2.12: tools for serializing data 0.4.0-SNAPSHOT [7/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-serialization-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-serialization-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-serialization-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-serialization-spark3_2.12 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-serialization-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-serialization-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-serialization-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-serialization-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-serialization-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-serialization-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-serialization-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-serialization-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-serialization-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ utils-serialization-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/target/utils-serialization-spark3_2.12-0.4.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ utils-serialization-spark3_2.12 ---
[WARNING] JAR will be empty - no content was marked for inclusion!
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/target/utils-serialization-spark3_2.12-0.4.0-SNAPSHOT-tests.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ utils-serialization-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-serialization-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-serialization-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-serialization-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ utils-serialization-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ utils-serialization-spark3_2.12 ---
model contains 7 documentable templates
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/target/utils-serialization-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ utils-serialization-spark3_2.12 ---
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/target/utils-serialization-spark3_2.12-0.4.0-SNAPSHOT.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-serialization-spark3_2.12/0.4.0-SNAPSHOT/utils-serialization-spark3_2.12-0.4.0-SNAPSHOT.jar
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-serialization-spark3_2.12/0.4.0-SNAPSHOT/utils-serialization-spark3_2.12-0.4.0-SNAPSHOT.pom
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/target/utils-serialization-spark3_2.12-0.4.0-SNAPSHOT-tests.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-serialization-spark3_2.12/0.4.0-SNAPSHOT/utils-serialization-spark3_2.12-0.4.0-SNAPSHOT-tests.jar
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-serialization/target/utils-serialization-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-serialization-spark3_2.12/0.4.0-SNAPSHOT/utils-serialization-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-deploy-plugin:3.0.0-M1:deploy (default-deploy) @ utils-serialization-spark3_2.12 ---
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-serialization-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml
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[INFO] 
[INFO] ---------< org.bdgenomics.utils:utils-intervalrdd-spark3_2.12 >---------
[INFO] Building utils-intervalrdd-spark3_2.12: IntervalRDD based on interval tree 0.4.0-SNAPSHOT [8/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-intervalrdd-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-intervalrdd-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Modified 0 of 8 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/target/utils-intervalrdd-spark3_2.12-0.4.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/target/utils-intervalrdd-spark3_2.12-0.4.0-SNAPSHOT-tests.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ utils-intervalrdd-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-intervalrdd-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-intervalrdd-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ utils-intervalrdd-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ utils-intervalrdd-spark3_2.12 ---
model contains 17 documentable templates
[INFO] Building jar: /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/target/utils-intervalrdd-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ utils-intervalrdd-spark3_2.12 ---
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/target/utils-intervalrdd-spark3_2.12-0.4.0-SNAPSHOT.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-intervalrdd-spark3_2.12/0.4.0-SNAPSHOT/utils-intervalrdd-spark3_2.12-0.4.0-SNAPSHOT.jar
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-intervalrdd-spark3_2.12/0.4.0-SNAPSHOT/utils-intervalrdd-spark3_2.12-0.4.0-SNAPSHOT.pom
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/target/utils-intervalrdd-spark3_2.12-0.4.0-SNAPSHOT-tests.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-intervalrdd-spark3_2.12/0.4.0-SNAPSHOT/utils-intervalrdd-spark3_2.12-0.4.0-SNAPSHOT-tests.jar
[INFO] Installing /home/jenkins/workspace/bdg-utils/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/utils-intervalrdd/target/utils-intervalrdd-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/utils/utils-intervalrdd-spark3_2.12/0.4.0-SNAPSHOT/utils-intervalrdd-spark3_2.12-0.4.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-deploy-plugin:3.0.0-M1:deploy (default-deploy) @ utils-intervalrdd-spark3_2.12 ---
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-intervalrdd-spark3_2.12/0.4.0-SNAPSHOT/maven-metadata.xml
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-intervalrdd-spark3_2.12/0.4.0-SNAPSHOT/utils-intervalrdd-spark3_2.12-0.4.0-20210128.175518-106.pom
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-intervalrdd-spark3_2.12/0.4.0-SNAPSHOT/utils-intervalrdd-spark3_2.12-0.4.0-20210128.175518-106-javadoc.jar (1.2 MB at 1.6 MB/s)
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Downloaded from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/utils/utils-intervalrdd-spark3_2.12/maven-metadata.xml (369 B at 2.4 kB/s)
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for utils 0.4.0-SNAPSHOT:
[INFO] 
[INFO] utils .............................................. SUCCESS [  5.262 s]
[INFO] utils-misc-spark3_2.12: Miscellaneous Spark utility code SUCCESS [ 12.313 s]
[INFO] utils-minhash-spark3_2.12: MinHash-based Jaccard similarity estimator SUCCESS [ 12.161 s]
[INFO] utils-io-spark3_2.12: I/O utils .................... SUCCESS [ 10.938 s]
[INFO] utils-statistics-spark3_2.12: Spark code for fitting statistical models SUCCESS [ 12.255 s]
[INFO] utils-cli-spark3_2.12: utilities for building command line applications SUCCESS [ 10.484 s]
[INFO] utils-serialization-spark3_2.12: tools for serializing data SUCCESS [ 16.296 s]
[INFO] utils-intervalrdd-spark3_2.12: IntervalRDD based on interval tree SUCCESS [ 17.847 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  01:37 min
[INFO] Finished at: 2021-01-28T09:55:28-08:00
[INFO] ------------------------------------------------------------------------
[WARNING] The requested profile "distribution" could not be activated because it does not exist.
Recording test results
[Checks API] No suitable checks publisher found.
Finished: SUCCESS